Table 2

Sequencing and read mapping (using hard merge) statistics for the three RNA-Seq datasets used in our experiments

Sample Id

# Lanes

Raw reads

Read length

Initial bases

Mapped read

Mapped bases


NA12878 (CEU)

7

113.9M

33 bp

3.8G

34.9M

1.2G

NA18498 (YRI)

4

40M

35-46 bp

1.6G

28.2M

1.1G

NA18517 (YRI)

4

38.6M

35-46 bp

1.6G

28.1M

1.1G


Duitama et al. BMC Genomics 2012 13(Suppl 2):S6   doi:10.1186/1471-2164-13-S2-S6

Open Data