Figure 1.

Example conflict graph GM overlayed on a multiple alignment, with alleles shown only for variant loci. These reads likely represent two haplotypes, with a sequencing error in read number 6. Hapler considers that there are many possible colorings of conflict graphs (e.g., dark and light are both proper colorings for read number 1), each representing a different reconstruction consistent with the data.

O'Neil and Emrich BMC Genomics 2012 13(Suppl 2):S4   doi:10.1186/1471-2164-13-S2-S4