This article is part of the supplement: Selected articles from the Tenth Asia Pacific Bioinformatics Conference (APBC 2012)
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity
Max Planck Institute for Molecular Genetics, Ihnestr. 73, 14195 Berlin, Germany
BMC Genomics 2012, 13(Suppl 1):S2 doi:10.1186/1471-2164-13-S1-S2Published: 17 January 2012
Additional file 1:
Table of all predicted interactions by tissue. Table with all predicted tissue-specific TF pairs with their motif similarity, p-value from the 3-way-contingency table test, shared co-factors and PPI database evidence.
Format: XLS Size: 165KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
Smooth scatterplot of p-values of the 3-way contingency table test in liver and motif similarity measure. Logarithm of the p-values of the 3-way contingency table test for TF pairs in liver (vertical axis) vs. motif similarity measure Smax (horizontal axis). Red points and orange triangles denote experimentally shown PPIs and trios with a known interacting co-factor, respectively.
Format: PDF Size: 830KB Download file
This file can be viewed with: Adobe Acrobat Reader