Table 3

Comparison of different methods for identifying functional peaks

Method

Total number of peaks

Number of genes mapped

Intersection with SRC1-dependent genes


MACS p = 1E-10

1,286

684

44

MACS p = 1E-8

1,966

996

57

MACS p = 1E-5

4,678

2,054

123

supervised-NB(th = 0.8,1:2)

11,835

3,875

238


Osmanbeyoglu et al. BMC Genomics 2012 13(Suppl 1):S1   doi:10.1186/1471-2164-13-S1-S1

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