Figure 6.

Output interface of "Gene Group" analysis in AtPAN. Co-occurrence of TF/TFBSs is listed in a table and illustrated in a diagram. The TRN of the group of genes is displayed in a new window. This example reveals that AtMYC2 (shown in blue node) regulates several JA-mediated plant defense genes expressions such as LCR77, AtLOX2, HEL, AtVSP1, and AtVSP2 (shown in purple nodes). Furthermore, AtMYC2 cooperates with JAZ proteins in the plant defense pathway. The PPIs data from experiments and computational prediction are shown in darkish and light orange, respectively.

Chen et al. BMC Genomics 2012 13:85   doi:10.1186/1471-2164-13-85
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