Table 6 |
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|
Different Expression Levels Among Members of Common Gene Families Expressed in the SAE1 |
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|
Category |
Gene name |
Gene symbol |
Median expression level (RPKM) |
|
|
|||
|
Cilia |
tubulin, alpha |
TUBA1A |
341.7 |
|
TUBA1B |
162.6 |
||
|
TUBA1C |
120.5 |
||
|
tubulin, beta |
TUBB2A |
38.7 |
|
|
TUBB2B |
23.3 |
||
|
TUBB4 |
14.8 |
||
|
Annexin (signal transduction) |
annexin A2 |
ANXA2 |
362.1 |
|
ANXA2P2 |
292.3 |
||
|
ANXA2P1 |
42.6 |
||
|
ANXA2P3 |
26.1 |
||
|
Glutathione S-transferase alpha |
glutathione S-transferase alpha |
GSTA1 |
248.9 |
|
GSTA2 |
143.9 |
||
|
GSTA3 |
15.9 |
||
|
GSTA5 |
9.3 |
||
|
Glutathione S-transferase mu |
glutathione S-transferase mu |
GSTM2 |
35.9 |
|
GSTM1 |
20.8 |
||
|
GSTM4 |
8.8 |
||
|
Sulfotransferase - phenol preferring |
sulfotransferase family, cytosolic, 1A, phenol-preferring |
SULT1A1 |
25.7 |
|
SULT1A4 |
14.6 |
||
|
SULT1A3 |
10.3 |
||
|
SULT1A2 |
5.4 |
||
|
SLX1A-SULT1A3 |
|||
|
SLX1B-SULT1A4 |
|||
|
Amylase |
amylase, alpha |
AMY1A |
43.4 |
|
AMY1B |
18.6 |
||
|
AMY1C |
15.1 |
||
|
AMY2B |
13.8 |
||
|
AMY2A |
7.3 |
||
|
Polarity/left right signaling |
NODAL modulator |
NOMO2 |
22.4 |
|
NOMO1 |
16.0 |
||
|
NOMO3 |
14.3 |
||
|
Metallothionein |
metallothionein |
MT1E |
33.2 |
|
MT1L |
2.4 |
||
|
MT1M |
1.1 |
||
|
MT1JP |
|||
|
P450 |
cytochrome P450, family 2, subfamily A, polypeptides |
CYP2A13 |
17.2 |
|
CYP2A6 |
4.2 |
||
|
CYP2A7 |
1.4 |
||
|
Aldo-keto reductase |
aldo-keto reductase family 7 |
AKR7A2 |
34.1 |
|
AKR7A3 |
3.0 |
||
|
AKR7L |
1.5 |
||
|
AKR7A2P1 |
|||
|
Aldehyde dehydrogenase |
alcohol dehydrogenase |
ADH1C |
52.2 |
|
ADH1B |
4.3 |
||
|
ADH1A |
2.6 |
||
|
Short chain dehydrogenase |
dehydrogenase/reductase |
DHRS9 |
68.4 |
|
MUC20 |
27.5 |
||
|
VPS53 |
4.0 |
||
|
SMU1 |
3.9 |
||
|
FAM153B |
0.4 |
||
|
LEP |
0.0 |
||
|
|
|||
|
1 List of gene families identified using BLAST with ≥ 90% identity and alignment lengths of at least 50% in both sequences. They were categorized by gene family and sorted in descending order within each category by median expression level for n = 5 nonsmokers. |
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|
Hackett et al. BMC Genomics 2012 13:82 doi:10.1186/1471-2164-13-82 |
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