Table 2

The number of SNPs from 96-plex validation detected using BWA/Samtools approach
Individual No. of successful assays Number of SNPs also detected by BWA Number of SNPs not detected by BWA Sensitivity False negative
True SNPs Total True SNPs Total
AA3 25 5 (45.5%) 11 2 14 71.4% 28.6%
AA6 28 14 (77.8%) 18 5 10 66.7% 33.3%
AM20 28 12 (70.6%) 17 3 11 80.0% 20.0%
AM22 26 5 (33.0%) 15 3 11 62.5% 37.5%

Wong et al.

Wong et al. BMC Genomics 2012 13:726   doi:10.1186/1471-2164-13-726

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