Open Access Research article

Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis

Mateus F Santana1, José CF Silva2, Aline D Batista1, Lílian E Ribeiro1, Gilvan F da Silva3, Elza F de Araújo1 and Marisa V de Queiroz1*

Author Affiliations

1 Present address: Laboratório de Genética Molecular e de Microrganismo, Universidade Federal de Viçosa, Viçosa, Brazil

2 Present address: Diretoria de Tecnologia da Informação, Universidade Federal de Viçosa, Viçosa, Brazil

3 Present address: Embrapa Amazônia Ocidental-CPAA, Manaus, Brazil

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BMC Genomics 2012, 13:720  doi:10.1186/1471-2164-13-720

Published: 22 December 2012

Additional files

Additional file 1:

Flanking sequences of full copies of the transposable elements. The table contains the variation in the TSRs (Target Site Repeat) of the transposable elements found.

Format: DOCX Size: 21KB Download file

Open Data

Additional file 2:

Sequences coding proteins downstream and upstream of full copies of the transposable elements. The table contains an analysis of the regions approximately 10,000 bp upstream and downstream of each transposable element with identification of 339 genes encoding proteins or protein domains.

Format: DOCX Size: 69KB Download file

Open Data

Additional file 3:

Basic structure of the Sagui transposable element. The figure contains the nucleotide sequence, the amino acid sequence, and the sequence used as a probe for the detection of Sagui in M. fijiensis populations.

Format: DOCX Size: 18KB Download file

Open Data

Additional file 4:

Alignment of four conservative sequences of Mariner elements used as probe. The figure contains the alignment of Fasta sequences used to primer design to obtain the probe for the detection of Mariner elements in M. fijiensis populations.

Format: DOCX Size: 16KB Download file

Open Data