Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis
1 Present address: Laboratório de Genética Molecular e de Microrganismo, Universidade Federal de Viçosa, Viçosa, Brazil
2 Present address: Diretoria de Tecnologia da Informação, Universidade Federal de Viçosa, Viçosa, Brazil
3 Present address: Embrapa Amazônia Ocidental-CPAA, Manaus, Brazil
BMC Genomics 2012, 13:720 doi:10.1186/1471-2164-13-720Published: 22 December 2012
Additional file 1:
Flanking sequences of full copies of the transposable elements. The table contains the variation in the TSRs (Target Site Repeat) of the transposable elements found.
Format: DOCX Size: 21KB Download file
Additional file 2:
Sequences coding proteins downstream and upstream of full copies of the transposable elements. The table contains an analysis of the regions approximately 10,000 bp upstream and downstream of each transposable element with identification of 339 genes encoding proteins or protein domains.
Format: DOCX Size: 69KB Download file
Additional file 3:
Basic structure of the Sagui transposable element. The figure contains the nucleotide sequence, the amino acid sequence, and the sequence used as a probe for the detection of Sagui in M. fijiensis populations.
Format: DOCX Size: 18KB Download file
Additional file 4:
Alignment of four conservative sequences of Mariner elements used as probe. The figure contains the alignment of Fasta sequences used to primer design to obtain the probe for the detection of Mariner elements in M. fijiensis populations.
Format: DOCX Size: 16KB Download file