Open Access Methodology article

Identification of 3 gene ends using transcriptional and genomic conservation across vertebrates

Marcos Morgan12*, Alessandra Iaconcig1 and Andrés Fernando Muro1*

Author Affiliations

1 International Centre for Genetic Engineering and Biotechnology (ICGEB), Padriciano 99, I 34149, Trieste, Italy

2 Present address: EMBL Monterotondo Adriano Buzzati-Traverso Campus, Via Ramarini 32, 00015, Monterotondo, Italy

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BMC Genomics 2012, 13:708  doi:10.1186/1471-2164-13-708

Published: 18 December 2012

Additional files

Additional file 1: Figure S1:

Describes the criteria used to classify PTEs in putative PASs or TSSs.

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Additional file 2: Table S1:

Lists the putative PASs identified with high CDI.

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Additional file 3: Figure S2:

Depicts two examples of PTEs with high CDI and no support from other databases.

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Additional file 4: Figure S3:

Shows the correlation between CDI values calculated using the Mammalian and Vertebrates PhyloP scores.

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Additional file 5: Table S2:

List the putative PASs identified with CD higher than 50% in humans.

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Additional file 6: Table S3:

List the putative PASs identified with CD higher than 50% in rats.

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Additional file 7: Figure S4:

Examples of PTEs identified in rats.

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Additional file 8: Table S4:

List the putative PASs identified with CD higher than 50% in dogs.

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Additional file 9: Figure S5:

Examples of PTEs identified in dogs.

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Additional file 10: Figure S6:

Homolog PTEs of the Kcnb1 gene in rats.

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Additional file 11: Figure S7:

Homolog PTEs of the Kcnq3 gene in dogs.

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