Table 4

Haplotype frequencies in the lean and fat lines of the core regions including 10 important genes
Gene and core regions Haplotype Number Haploptypes Haplotype frequency P-value1
Lean line Fat line
MAOB, MAOA 1 CAAGG 0.645 0.615 <0.001
Chr1: 114789487-114875623 2 AAAGA 0.197 0
3 CGGAG 0.158 0.269
4 CGAGA 0 0.077
5 AAAGG 0 0.038
RB1 1 GGAA 0.421 0.410 <0.001
Chr1: 173098805-173190831 2 GAGG 0.368 0.103
3 GAAA 0.211 0.192
4 AAGG 0 0.244
5 AGGA 0 0.038
6 GAGA 0 0.013
MYO7A 1 AGG 0.618 0.090 <0.001
Chr1: 198071099-198113519 2 GAA 0.316 0.207
3 GGA 0.066 0.652
4 GAG 0 0.037
5 GGG 0 0.014
EHBP1 1 GGG 0.855 0.090 <0.001
Chr3: 9177907-9222825 2 GAG 0.132 0.359
3 AGG 0.013 0.128
4 GGA 0 0.423
LRP2BP 1 GGGG 0.443 0.487 <0.001
Chr4: 40653593-40713404 2 AAAA 0.338 0.211
3 GGAA 0.176 0
4 AAGG 0.044 0.303
BBS7 1 AGGC 0.605 0.282 <0.001
Chr4: 55424480-55472209 2 GAAA 0.368 0.301
3 AAAA 0.026 0
4 AGAC 0 0.198
5 AGAA 0 0.161
6 GAAC 0 0.058
LRP1B 1 AGAGAC 0.361 0.013 <0.001
Chr7: 33795201-33904515 2 GGAGGA 0.197
3 AGAAGA 0.105 0.154
4 GGGGGA 0.066 0.449
5 AGAAGC 0.057 0.346
6 GAGGGA 0.055 0.038
7 GAGAGA 0.050 0
8 GGAAGA 0.049 0
9 GAGGAA 0.026 0
10 GGAGAA 0.018 0
11 AGAAAC 0.016 0
MYO9A 1 GGGAA 0.355 0.051 <0.001
Chr10: 763998-831991 2 AAGAA 0.276 0.358
3 AAGAG 0.237 0
4 GGGGA 0.118 0.013
5 AGGAA 0.013 0.065
6 AGAAA 0 0.500
7 AAAAA 0 0.013
PRPSAP1 1 AGA 0.816 0.615 <0.001
Chr18: 4433126-4445816
2 GGG 0.118 0.026
3 AAG 0.066 0.090
4 AGG 0 0.269

1P-values of Fisher’s Exact Test for difference analysis of haplotype frequencies between lean and fat lines.

Zhang et al.

Zhang et al. BMC Genomics 2012 13:704   doi:10.1186/1471-2164-13-704

Open Data