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Open Access Highly Accessed Research article

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture

Lecong Zhou and Jason A Holliday*

Author Affiliations

Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA

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BMC Genomics 2012, 13:703  doi:10.1186/1471-2164-13-703

Published: 14 December 2012

Additional files

Additional file 1:

Table S1. Statistics of raw and preprocessed reads.

Format: DOCX Size: 107KB Download file

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Additional file 2:

Table S2. Statistics of sam alignments.

Format: DOCX Size: 147KB Download file

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Additional file 3:

Figure S1. Cumulative distribution of coverage depth in adjacent regions adjacent to baits. Both mean coverage across all 48 genotypes (red line) and mean coverage for individual genotypes (colored points) are provided.

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Additional file 4:

Figure S2. Cumulative distribution of coverage depth in off-target regions. Both mean coverage across all 48 genotypes (red line) and mean coverage for individual genotypes (colored points) are provided.

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Additional file 5:

Figure S3. Boxplots of coverage depth for single-copy genes and those with retained salicoid duplicates.

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Additional file 6:

Figure S4. Distribution of baits across the 19 poplar linkage groups. Points indicate bait locations, light blue line indicates number of baits in 1Mb sliding windows, and red line indicates mean depth of sequencing coverage in 1Mb sliding windows.

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Open Data