Table 2

Summary of read numbers based on the RNA-Seq data from 'Suli' pear during bud dormancy
Summary Nov. 15 Dec. 15 Jan. 15 Feb. 15
Total Clean Reads 15,156,144 15,250,358 14,364,828 13,920,719
Total Mapped Reads 12,267,906 12,336,227 11,604,366 10,973,976
Total Mapped Reads / Total Clean Reads 80.94% 80.89% 80.78% 78.83%
Perfect Match Reads 9,305,310 9,327,977 8,832,506 8,222,365
Perfect Match Reads / Total Clean Reads 61.40% 61.17% 61.49% 59.07%
≤2 bp Mismatch Reads 2,962,596 3,008,250 2,771,860 2,751,611
≤2 bp Mismatch Reads / Total Clean Reads 19.55% 19.73% 19.30% 19.77%
Unique Match Reads 7,902,930 7,977,788 7,457,487 7,042,745
Unique Match Reads / Total Clean Reads 52.14% 52.31% 51.91% 50.59%
Multi-Position Match Reads 4,364,976 4,358,439 4,146,879 3,931,231
Multi-Position Match Reads / Total Clean Reads 28.80% 28.58% 28.87% 28.24%
Total-Unmapped Reads 2,888,238 2,914,131 2,760,462 2,946,743
Total-Unmapped Reads / Total Clean Reads 19.06% 19.11% 19.22% 21.17%

Liu et al.

Liu et al. BMC Genomics 2012 13:700   doi:10.1186/1471-2164-13-700

Open Data