Table 1

Statistics of small RNA sequences from different tomato fruit ripening stages

Ripening stages

Reads types

Redundant

Non-redundant


Raw reads

4,333,963

Low quality reads

1,562,982

Mature green

Adaptor reads

382,811

High quality reads(≥ 18nt)

2,388,170

1,604,689

Matching the genome

356, 350

141,075

rRNA/tRNA/snRNA/snoRNA matches

65,593

11,177

Raw reads

5,514,197

Low quality reads

1,728,593

Breaker stage

Adaptor reads

186,021

High quality reads(≥ 18nt)

3,599,583

2,309,447

Matching the genome

681,895

346,166

rRNA/tRNA/snRNA/snoRNA matches

62,734

9,518

Raw reads

5,334,158

Low quality reads

3,042,644

Red Ripe stage

Adaptor reads

17,464

High quality reads(≥ 18nt)

2,274,050

1,447,762

Matching the genome

437,520

220,188

rRNA/tRNA/snRNA/snoRNA matches

29,865

4,750


Zuo et al. BMC Genomics 2012 13:7   doi:10.1186/1471-2164-13-7

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