Additional file 1.
Absolute expression levels for all NCBI RefSeq transcripts in stages EL 31, 35, 36 and 38 of developing Shiraz grape. Additional file 1 consists of three tables in Microsoft Excel format. Table 1 contains RPKM data for all NCBI RefSeq Vitis vinifera transcripts at developmental stages E-L 31, E-L 35, E-L 36 and E-L 38, and includes their NCBI putative functional annotation, and the closest matching Genoscope accession and Affymetrix Probeset ID for the purpose of cross-referencing to other work. Each Probeset ID is listed once only, and matches to its most similar RefSeq transcript. The cluster to which each gene has been allocated with regards to Figure 3 is also shown. Table 2 contains transcripts expressed with an RPKM of greater than 200 at all four stages of berry development under investigation. Corresponding Genoscope annotations and Affymetrix GeneChip probeset IDs have been assigned through BLASTx and VitisNet Network or Category functional annotations are taken from . Table 3 contains a complete list of all RefSeq transcripts not detected with at least five unique sequencing reads, or with and RPKM ≥ 0.5 in any of the samples.
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Sweetman et al. BMC Genomics 2012 13:691 doi:10.1186/1471-2164-13-691