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Open Access Highly Accessed Research article

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries

Santosh Kumar12, Frank M You1 and Sylvie Cloutier12*

Author Affiliations

1 Cereal Research Centre, Agriculture and Agri-Food Canada, 195 Dafoe Road, Winnipeg, Manitoba, R3T 2M9, Canada

2 Department of Plant Science, University of Manitoba, 66 Dafoe Road, Winnipeg, Manitoba, R3T 2N2, Canada

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BMC Genomics 2012, 13:684  doi:10.1186/1471-2164-13-684

Published: 6 December 2012

Additional files

Additional file 1:

Read lengths and mapping results from the Illumina GAIIx reads of the reduced representation libraries of eight flax genotypes. Read mapping was performed against the new whole genome shotgun sequence assembly (LinUsi_v1.1) of CDC Bethune using Bowtie.

Format: PDF Size: 19KB Download file

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Open Data

Additional file 2:

Transition and transversion frequencies of the 55,465 SNPs.

Format: PDF Size: 40KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data