Genetic linkage map of G. scabra. Genetic linkage map of G. scabra. based on a BC1 mapping population generated by crossing G. scabra SP6A1 × G. triflora Aki6PS DH line. Map was generated with 307 (101 SSR, 103 AFLP, 54 RAPD, 38 REMAP and 11 functional) polymorphic markers using JoinMap version 4.1 at an LOD value of 9.0, with the Kosambi mapping function. In total, 273 markers (97 SSR, 97 AFLP, 39 RAPD, 30 REMAP and 10 functional) were mapped on 19 linkage groups (LG), which spanned 613.7 cM. Distortions at the 5%, 1% and 0.1% level are indicated as *, ** and ***, respectively. AFLP, RAPD, and REMAP markers are indicated as Mblack circleEblack circle-, Pblack circleblack circle- and REMblack circle-, respectively. Of the 10 functional markers, flowering related genes, FT1, FT2, TFL1 and W14/15 are shown in red, and flower pigmentation related genes CHS, CHI, ANS, F3′5′H1, MYB3 and bHLH1 are shown in blue. Stem pigmentation (Stem Pig), which represents a phenotypic trait, is underlined.
Nakatsuka et al. BMC Genomics 2012 13:672 doi:10.1186/1471-2164-13-672