Table 1

Reads mapped to A. marginale from three sequencing platforms
Platform Strain Total reads A. marginale reads % of reads mapped to A. marginale Average matched read length
Roche 454 STM1 726,051 269,730 37.1 381.7
FL2 1,018,447 326,440 32.0 396.5
Ion Torrent STM 1,004,747 295,629 29.4 111.0
FL 2,043,607 577,284 28.2 111.2
Illumina STM 88,650,713 4,604,993 5.2 100
FL 81,507,967 3,845,853 4.7 100

1STM: St. Maries strain.

2FL: Florida strain.

Pierlé et al.

PierlĂ© et al. BMC Genomics 2012 13:669   doi:10.1186/1471-2164-13-669

Open Data