Table 2

RNA-Seq sequencing and coverage of the grapevine transcriptome for each biological replicate
Treatmenta Replicateb Sequenced bases(Mbp)c Read length(bp)d Coverage (fold)e
C 1 1844 95 42
2 1812 95 42
3 1393 93 32
T39 1 2195 94 50
2 3054 94 70
3 2253 95 52
C+P.v. 1 1981 95 46
2 2244 95 52
3 2049 95 47
T39+P.v. 1 1999 94 46
2 2500 94 57
3 2028 95 47

a Grapevine leaves of control (C), Trichoderma harzianum T39-treated (T39), Plasmopara viticola-inoculated control (C+P.v.) and P. viticola-inoculated T39-treated (T39+P.v.) plants.

b Biological replicates (plants), numbered from 1 to 3.

c Total bases (Mbp) sequenced by RNA-Seq analysis that passed the quality check.

d Mean length (bp) of sequenced reads.

e Coverage of the Pinot Noir grapevine transcriptome [77] Release 3 (43.5 Mbp) [78].

Perazzolli et al.

Perazzolli et al. BMC Genomics 2012 13:660   doi:10.1186/1471-2164-13-660

Open Data