Table 1

RNA-Seq sequencing and read mapping to the grapevine genome
Treatmenta Replicateb Total readsc Filtered readsd % Mapped readse % Unique readsf % Multi-readsg %
C 1 20480361 19388264 95 17975427 93 17473619 97 501808 3
2 20182309 19095859 95 17935380 94 17392482 97 542898 3
3 15856292 14845528 94 13327853 90 12749078 96 578775 4
T39 1 24312739 23208015 95 21103884 91 20207496 96 896388 4
2 35315408 32565826 92 30409086 93 29495812 97 913274 3
3 25081653 23722385 95 21873968 92 21145558 97 728410 3
C+P.v. 1 21934228 20800485 95 19240139 92 18603657 97 636482 3
2 25097152 23684317 94 21637677 91 20896985 97 740692 3
3 22471334 21555054 96 19384445 90 18634940 96 749505 4
T39+P.v. 1 22897386 21318685 93 18406407 86 17576560 95 829847 5
2 29049603 26710912 92 24801196 93 23981057 97 820139 3
3 22603588 21369934 95 19558774 92 18859902 96 698872 4

a Grapevine leaves of control (C), Trichoderma harzianum T39-treated (T39), Plasmopara viticola-inoculated control (C+P.v.) and P. viticola-inoculated T39-treated (T39+P.v.) plants.

b Biological replicates (plants), numbered from 1 to 3.

c Total sequenced reads as sum of reads obtained from two replicates of sequencing for each treatment.

d Reads passing the quality check and the corresponding percentage (%) of total reads.

e Reads mapping to Pinot Noir grapevine genome [77] Release 3 [78], and the corresponding percentage (%) of filtered reads.

f Reads mapping to unique locations in the grapevine genome, and the corresponding percentage (%) of mapped reads.

g Reads mapping to more than one location (2–100 matches) in the grapevine genome, and the corresponding percentage (%) of mapped reads.

Perazzolli et al.

Perazzolli et al. BMC Genomics 2012 13:660   doi:10.1186/1471-2164-13-660

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