Open Access Highly Accessed Research article

De Novo characterization of the banana root transcriptome and analysis of gene expression under Fusarium oxysporum f. sp. Cubense tropical race 4 infection

Zhuo Wang13, JianBin Zhang1, CaiHong Jia1, JuHua Liu1, YanQiang Li2, XiaoMin Yin2, BiYu Xu1* and ZhiQiang Jin12*

Author Affiliations

1 Key Laboratory of Tropical Crop Biotechnology, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Hainan, 571101, China

2 Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Hainan, 570101, China

3 College of Agriculture, Hainan University, Hainan, 570228, China

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BMC Genomics 2012, 13:650  doi:10.1186/1471-2164-13-650

Published: 21 November 2012

Additional files

Additional file 1:

Gene ID and expression of the assembled sequences.

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Additional file 2:

Relationship between the number of detected genes and sequencing amount (total tag number). All figures show a trend of saturation. When the sequencing amount reaches 2 millions, the number of detected genes almost ceases to increase.

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Additional file 3:

Summary of the most abundant genes expressed in 2 DPI with annotation. TPM: number of transcripts per million tags.

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Additional file 4:

GO term are enriched in 2 DPI, 4 DPI and 6 DPI.

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Additional file 5:

Pathways are enriched in 2 DPI, 4 DPI and 6 DPI.

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Additional file 6:

Genes are enriched in Drug metabolism - cytochrome P450.

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Additional file 7:

Gene expression of alpha-linolenic acid metabolism pathways in 2 DPI, 4 DPI and 6 DPI.

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