Table 2

Putative expression of de-novo identified families of TEs. TE families are constituted by sequences with similarity80% among all its members
superfamily total number of TE families Number of families hitting at least one EST with a minimum coverage of 70% EST proportion of TE families with putative expression
Copia 819 77 9.40
Gypsy 263 20 7.60
L1 115 1 0.87
hAT 68 7 10.29
Mutator 60 0 0.00
En-Spm 38 1 2.63
Helitron 32 0 0.00
Harbinger 15 0 0.00
Tc1-Mariner 7 0 0.00

González and Deyholos

González and Deyholos BMC Genomics 2012 13:644   doi:10.1186/1471-2164-13-644

Open Data