Table 2

A list of selected down-regulated genes and their functional categories
No Locus FC Gene ontology class Gene annotation detail
Carbohydrate adjustments
1 At5g49360 3.07 hydrolase activity, hydrolyzing O-glycosyl compounds BXL1__BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds
2 At2g19800 2.93 inositol oxygenase activity MIOX2__MIOX2 (MYO-INOSITOL OXYGENASE 2)
3 At4g30280 2.82 glucan metabolic process ATXTH18_XTH18__ATXTH18/XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds
4 At5g52050 2.49 drug transporter activity MATE efflux protein-related
5 At1g02640 2.49 hydrolase activity, hydrolyzing O-glycosyl compounds BXL2__BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds
6 At1g23480 2.45 transferase activity, transferring glycosyl groups ATCSLA03_ATCSLA3_CSLA03__ATCSLA03 (Cellulose synthase-like A3); transferase, transferring glycosyl groups
7 At3g27540 2.42 transferase activity, transferring glycosyl groups glycosyltransferase family 17 protein
8 At3g06770 2.36 polygalacturonase activity glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein
9 At1g10550 2.31 glucan metabolic process XET_XTH33__XTH33 (xyloglucan:xyloglucosyltransferase 33); hydrolase, acting on glycosyl bonds
10 At1g10400 2.29 transferase activity, transferring glycosyl groups UDP-glycosyltransferase/transferase, transferring glycosyl groups
11 At4g25810 2.24 glucan metabolic process XTR6_XTH23__XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds
12 At1g23870 2.17 trehalose-phosphatase activity ATTPS9_TPS9__ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups/trehalose-phosphatase
13 At1g12240 2.12 sucrose catabolic process, using beta-fructofuranosidase ATBETAFRUCT4_VAC-INV__ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/hydrolase, hydrolyzing O-glycosyl compounds
14 At5g56870 2.09 beta-galactosidase activity BGAL4__BGAL4 (beta-galactosidase 4); beta-galactosidase
15 At2g47930 2.06 anchored to membrane AGP26__AGP26/ATAGP26 (ARABINOGALACTAN PROTEINS 26)
16 At4g30290 2.05 glucan metabolic process ATXTH19__ATXTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19); hydrolase, acting on glycosyl bonds
17 At5g27350 2.04 sugar porter activity SFP1__SFP1; carbohydrate transmembrane transporter/sugar:hydrogen ion symporter
18 At2g32540 2.02 polysaccharide biosynthetic process ATCSLB04_ATCSLB4_CSLB04__ATCSLB04 (Cellulose synthase-like B4); transferase/transferase, transferring glycosyl groups
19 At3g62720 1.86 polysaccharide biosynthetic process ATXT1__ATXT1; transferase/transferase, transferring glycosyl groups
20 At4g37800 1.77 glucan metabolic process xyloglucan:xyloglucosyltransferase, putative/xyloglucanendotransglycosylase, putative/endo-xyloglucantransferase, putative
21 At1g11260 1.65 sugar porter activity STP1__STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/sugar:hydrogen ion symporter
22 At1g75220 1.5 sugar porter activity integral membrane protein, putative
Lipid metabolism
1 At4g22753 2.84 catalytic activity SMO1-3_ATSMO1_SMO1__SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE); catalytic
2 At5g52050 2.49 drug transporter activity MATE efflux protein-related
3 At1g17420 2.37 lipoxygenase activity LOX3__LOX3 (Lipoxygenase 3); iron ion binding/lipoxygenase/metal ion binding/oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
4 At3g47560 2.27 catalytic activity esterase/lipase/thioesterase family protein
5 At5g24150 2.22 sterol biosynthetic process SQP1__SQP1 (Squalenemonooxygenase 1)
6 At3g23470 2.1 lipid biosynthetic process cyclopropane-fatty-acyl-phospholipid synthase
7 At1g28600 1.94 lipid metabolic process lipase, putative
8 At5g18630 1.93 lipid metabolic process lipase class 3 family protein
9 At5g24210 1.92 lipid metabolic process lipase class 3 family protein
10 At1g02660 1.79 lipid metabolic process lipase class 3 family protein
11 At3g23510 1.77 lipid biosynthetic process cyclopropane fatty acid synthase, putative/CPA-FA synthase, putative
12 At4g26790 1.73 lipid metabolic process GDSL-motif lipase/hydrolase family protein
13 At2g42690 1.68 lipid metabolic process lipase, putative
14 At1g28670 1.67 lipid metabolic process ARAB-1__ARAB-1 (Arabidopsis lipase); carboxylesterase
15 At4g13050 1.55 fatty acid biosynthetic process acyl-(acyl carrier protein) thioesterase, putative/acyl-ACP thioesterase, putative/oleoyl-(acyl-carrier protein) hydrolase, putative/S-acyl fatty acid synthase thioesterase, putative
16 At1g64400 1.5 fatty acid biosynthetic process long-chain-fatty-acid--CoA ligase, putative/long-chain acyl-CoA synthetase, putative
Others
1 At1g12610 6.03 gibberellin biosynthetic process DDF1__DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding/transcription factor
2 At2g37180 2.36 membrane RD28_PIP2;3_PIP2C__RD28 (plasma membrane intrinsic protein 2;3); water channel
3 At3g30775 2.22 proline catabolic process PRODH_ERD5_ATPDH_ATPOX_AT-POX_PRO1__ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase
4 At4g19420 2.03 carboxylic ester hydrolase activity pectinacetylesterase family protein
5 At4g22200 1.95 regulation of membrane potential AKT2/3_AKT2_AKT3__AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding/inward rectifier potassium channel
6 At5g21100 1.92 endomembrane system L-ascorbate oxidase, putative
7 At1g19670 1.59 chlorophyllase activity ATCLH1_ATHCOR1_CORI1__ATCLH1 (CORONATINE-INDUCED PROTEIN 1)

Nair et al.

Nair et al. BMC Genomics 2012 13:643   doi:10.1186/1471-2164-13-643

Open Data