Table 1

General characteristics of the LPP-1 plasmids of Pantoea strains included in the study
Group # Organism Strain Isolated from Lifestyle Sequence Status Reference Plasmid size (kb) G+C (%) # CDS
I 1 P. agglomerans E325 Apple Biocontrol Draft [a] 535.8 53.52 552
I 2 P. agglomerans IG1 Wheat Saprophyte Draft [58] 616.4 52.65 578
I 3 P. agglomerans MP2 Termite Symbiont Draft [b] 560.6 53.18 527
I 4 P. agglomerans SL1_M5 Woodwasp Symbiont Draft [11] 526.2 53.53 499
I 5 P. anthophila Sc1 Cotton Pathogen Complete [59] 411.4 56.27 376
I 6 P. eucalyptii αB Bark beetle Symbiont Draft [c] 499.6 54.2 492
I 7 P. vagans C9-1 Apple Biocontrol Complete [60] 529.7 53.87 474
I 8 P. vagans MP7 Termite Symbiont Draft [b] 508.6 53.98 453
II 1 P. ananatis AJ13355 Soil Saprophyte Complete [56] 321.7 51.97 272
II 2 P. ananatis B1-9 Onion Saprophyte Draft [57] 314.4 51.68 267
II 3 P. ananatis BD442 Maize Pathogen Draft [a] 352.8 51.13 320
II 4 P. ananatis LMG20103 Eucalyptus Pathogen Complete [54] 305.7 51.76 259
II 5 P. ananatis LMG2665T Pineapple Pathogen Draft [a] 317.1 52.11 270
II 6 P. ananatis LMG5342 Human Pathogen Complete [55] 302.6 51.47 255
II 7 P. ananatis PA4 Onion Pathogen Draft [a] 312.7 52.17 263
II 8 P. ananatis PA13 Rice Pathogen Draft [53] 280.8 52.25 238
II 9 P. stewartii subsp. indologenes LMG2632T Foxtail millet Pathogen Draft [a] 301.9 51.44 265
II 10 P. stewartii subsp. stewartii DC283 Maize Pathogen Draft [c] 294.6 51.51 267
III 1 Pantoea sp. At-9b Leaf cutter ant Symbiont Complete [c] 793.9 54.58 750
III 2 P. cypripedii LMG2657T Orchid Pathogen Draft [a] 645.5 53.78 571

The host or site of isolation, the lifestyle as symbiont, saprophyte, biocontrol agent or pathogen and the status of the genome sequence for each of the 20 Pantoea strain included in this study, as well as the LPP-1 group they belong to are shown. Characteristics of the LPP-1 plasmids, including the genome size (in kilobases), G+C content (%) and number of protein coding sequences (CDS) encoded on each LPP-1 plasmid are given. In the Reference column [a] denotes those genome sequences which were obtained in our laboratories, while [b] denotes those provided by Poulsen et al., University of Copenhagen, Denmark. References labelled [c] are those draft or complete genomes that are publically available in the NCBI database, which have not been published. These include Pantoea sp. At-9b (NC_014838) and Pantoea eucalypti αB (AEDL00000000) submitted by Lucas et al. and P. stewartii subsp. stewartii DC283 (AHIE00000000) submitted by Biehl et al.

De Maayer et al.

De Maayer et al. BMC Genomics 2012 13:625   doi:10.1186/1471-2164-13-625

Open Data