Table 1

The sample of the mapping table containing information from miRBase and Ensembl
Mirbase_id s. Overlap Evidence Ensembl_gene_id Ensembl_transcript_id Affy_hg_u133_plus_2 Affy_hu x _1_0_st_v2 Chromosome Start_ position End_ position miR miR*
hsa-let-7a-3 + exon HGNC_automatic_transcript ENSG00000197182 ENST00000360737 232480_at 3948921 22 46449741 46509808 hsa-let-7a hsa-let-7a*
hsa-let-7a-3 + exon Vega_transcript ENSG00000197182 ENST00000360737 232480_at 3948949 22 46449741 46509808 hsa-let-7a hsa-let-7a*
hsa-let-7b + exon HGNC_automatic_transcript ENSG00000197182 ENST00000360737 232480_at 3948921 22 46449741 46509808 hsa-let-7b hsa-let-7b*
hsa-let-7b + exon Vega_transcript ENSG00000197182 ENST00000360737 232480_at 3948949 22 46449741 46509808 hsa-let-7b hsa-let-7b*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915214 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915194 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915317 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915201 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915291 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915202 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915257 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_curated_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915275 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron HGNC_automatic_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915192 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron Vega_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915318 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron Vega_transcript ENSG00000215386 ENST00000308787 1559901_s_at 3915193 21 17442842 17982094 hsa-let-7c hsa-let-7c*
hsa-let-7c + intron Vega_transcript ENSG00000215386 ENST00000400178 1559901_s_at 3915214 21 17442842 17982094 hsa-let-7c hsa-let-7c*

This table is used by the mapping function, essential for both prediction methods.

Stempor et al.

Stempor et al. BMC Genomics 2012 13:620   doi:10.1186/1471-2164-13-620

Open Data