Table 1

Basic genomic information of all four D.melanogaster isolated Providencia
Species Strain DSM1 Sequenced size2 Physical size3 # of contigs or scaffolds Average GC % # of genes Est. # of missing genes4
Providencia sneebia Type 19967 chromosome 3.5 Mb 3.8 Mb 14 38.08 3482 275
pPSN1 10787 bp 10787 bp 1 33.50 12 0
pPSN2 7592 bp 7592 bp 1 35.05 12 0
pPSN3 4321 bp 4321 bp 1 31.50 4 0
Providencia rettgeri Dmel1 - chromosome 4.2 Mb 4.3 Mb 9 40.20 4532 107
pPRET1 5567 bp 5567 bp 1 40.81 6 0
Providencia alcalifaciens Dmel2 - chromosome 4.2 Mb unk 15 41.17 3900 unk
pPALC1 14114 bp 14114 bp 1 37.57 17 0
Providencia burhodogranariea Type 19968 chromosome 4.5 Mb unk 8 38.23 3985 unk

1Strain number in DSM Culture Collection.

2Sum of the contigs or scaffolds lengths.

3Size of the physical chromosome as determined by optical maps. “unk” indicates unknown physical size.

4Estimated from the known length of sequence missing from these assemblies divided by the average gene length. “unk” indicates that the number of missing genes cannot be calculated due to an unknown physical size.

Galac and Lazzaro

Galac and Lazzaro BMC Genomics 2012 13:612   doi:10.1186/1471-2164-13-612

Open Data