Table 1

Summary of assembly and EST data
Infested P. pinaster Control P. pinaster Infested P. pinea Control P. pinea
No. of Reads 450,053 375,168 342,141 226,608
Total Bases 145,356,992 121,441,000 111,032,000 70,672,704
Average read length after trim quality 322 323 324 311
No. of contigs 12,157 8,808 9,555 4,175
Average contig length 806 738 783 636
Range contig length 32-3,968 12-4,031 38-4,665 11-2,828
No. of Contigs with 2 reads 8 0 0 0
No. of Contigs with > 2 reads 12,149 8,808 9,555 4,175
Contigs with BLASTx matches (E-value ≤ 10-6) 531 422 521 207
*Contigs with BLASTx matches (E-value ≤ 10-2) 3,532 2,169 2,339 1,436
Contigs determined by ESTscan 511 435 413 424
Total no. of transcripts 13,003 9,250 9,968 5,516

*Contigs without BLASTx matches at an E-value cut-off of 10-6 were queried again with BLASTx with an E-value cut-off of 10-2.

Santos et al.

Santos et al. BMC Genomics 2012 13:599   doi:10.1186/1471-2164-13-599

Open Data