## Table 1 |
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The candidate genes nominated by expression difference and/or coding polymorphisms for skeletal muscle weight QTL () Skmwaffecting muscle weight between the LG/J (L) and SM/J (S) strains |
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Gene |
Chr |
QTL |
Type |

BC029722 |
2 | Skmw21 | L < S |

Uqcc |
2 | Skmw21 | L > S |

Adig |
2 | Skmw22 | L < S |

Ppp1r16b |
2 | Skmw22 | L < S |

Fam83d |
2 | Skmw22 | L > S |

Gm826 |
2 | Skmw22 | L < S |

Chd6 |
2 | Skmw22 | L > S |

Rasl11b |
5 | Skmw24 | L < S |

Kdr |
5 | Skmw24 | L < S L1176F |

Ppat |
5 | Skmw24 | L > S |

Osbpl3 |
6 | Skmw25 | L < S |

Mrpl19 |
6 | Skmw26 | L < S |

Htra2 |
6 | Skmw26 | T449D |

Adamts9 |
6 | Skmw27 | P699A |

Gm15737 |
6 | Skmw27 | L < S |

Rybp |
6 | Skmw28 | L > S |

Il17re |
6 | Skmw29 | L > S |

Irak2 |
6 | Skmw29 | L > S |

Sec13 |
6 | Skmw29 | K87M |

Plbd1 |
6 | Skmw31 | L < S |

Mgp |
6 | Skmw31 | L<S Q55L |

Rerg |
6 | Skmw31 | L < S |

Synm |
7 | Skmw32 | R946Q P835S |

Pgpep1l |
7 | Skmw32 | L < S |

Mesdc2 |
7 | Skmw33 | L < S |

Fah |
7 | Skmw33 | L > S |

Nox4 |
7 | Skmw33 | L < S |

Prss23 |
7 | Skmw33 | L > S |

Mical2 |
7 | Skmw34 | L > S |

2310014F06Rik |
7 | Skmw34 | L < S |

Arntl |
7 | Skmw34 | L > S |

Fgfr2 |
7 | Skmw35 | L > S |

Irs2 |
8 | Skmw36 | L < S |

Col4a1 |
8 | Skmw36 | L < S |

Col4a2 |
8 | Skmw36 | L < S |

Lamp1 |
8 | Skmw36 | R294H |

Grtp1 |
8 | Skmw36 | L < S |

Adprhl1 |
8 | Skmw36 | L > S |

Tfdp1 |
8 | Skmw36 | R302H |

2610019F03Rik |
8 | Skmw36 | L > S |

Snord13 |
8 | Skmw37 | L > S |

Dlc1 |
8 | Skmw37 | L < S |

Lphn1 |
8 | Skmw39 | L > S |

Podnl1 |
8 | Skmw39 | L > S |

Adcy1 |
11 | Skmw40 | L > S |

Tns3 |
11 | Skmw40 | T1067M |

Rhbdf1 |
11 | Skmw42 | R42W |

Hba-a2 |
11 | Skmw42 | L > S |

Stk10 |
11 | Skmw42 | L < S |

Type indicates whether gene is more (>) or less (<) abundant, or position and swapped amino acids (substitutions in bold are more likely to affect protein function than those in regular font).

Lionikas * et al.*

Lionikas * et al.* *BMC Genomics* 2012 **13**:592 doi:10.1186/1471-2164-13-592