Table 1

The candidate genes nominated by expression difference and/or coding polymorphisms for skeletal muscle weight QTL (Skmw) affecting muscle weight between the LG/J (L) and SM/J (S) strains
Gene Chr QTL Type
BC029722 2 Skmw21 L < S
Uqcc 2 Skmw21 L > S
Adig 2 Skmw22 L < S
Ppp1r16b 2 Skmw22 L < S
Fam83d 2 Skmw22 L > S
Gm826 2 Skmw22 L < S
Chd6 2 Skmw22 L > S
Rasl11b 5 Skmw24 L < S
Kdr 5 Skmw24 L < S L1176F
Ppat 5 Skmw24 L > S
Osbpl3 6 Skmw25 L < S
Mrpl19 6 Skmw26 L < S
Htra2 6 Skmw26 T449D
Adamts9 6 Skmw27 P699A
Gm15737 6 Skmw27 L < S
Rybp 6 Skmw28 L > S
Il17re 6 Skmw29 L > S
Irak2 6 Skmw29 L > S
Sec13 6 Skmw29 K87M
Plbd1 6 Skmw31 L < S
Mgp 6 Skmw31 L<S Q55L
Rerg 6 Skmw31 L < S
Synm 7 Skmw32 R946Q P835S
Pgpep1l 7 Skmw32 L < S
Mesdc2 7 Skmw33 L < S
Fah 7 Skmw33 L > S
Nox4 7 Skmw33 L < S
Prss23 7 Skmw33 L > S
Mical2 7 Skmw34 L > S
2310014F06Rik 7 Skmw34 L < S
Arntl 7 Skmw34 L > S
Fgfr2 7 Skmw35 L > S
Irs2 8 Skmw36 L < S
Col4a1 8 Skmw36 L < S
Col4a2 8 Skmw36 L < S
Lamp1 8 Skmw36 R294H
Grtp1 8 Skmw36 L < S
Adprhl1 8 Skmw36 L > S
Tfdp1 8 Skmw36 R302H
2610019F03Rik 8 Skmw36 L > S
Snord13 8 Skmw37 L > S
Dlc1 8 Skmw37 L < S
Lphn1 8 Skmw39 L > S
Podnl1 8 Skmw39 L > S
Adcy1 11 Skmw40 L > S
Tns3 11 Skmw40 T1067M
Rhbdf1 11 Skmw42 R42W
Hba-a2 11 Skmw42 L > S
Stk10 11 Skmw42 L < S

Type indicates whether gene is more (>) or less (<) abundant, or position and swapped amino acids (substitutions in bold are more likely to affect protein function than those in regular font).

Lionikas et al.

Lionikas et al. BMC Genomics 2012 13:592   doi:10.1186/1471-2164-13-592

Open Data