Table 1

Summary of the collected sequence data
Used in de novo assembly Used in mapping
RNA source Raw PE reads PE reads SE reads PE reads SE reads
Light extraction 1 28,073,980 5,668,652 3,229,442 14,751,144 3,738,405
Light extraction 2 20,442,438 4,589,450 2,930,651 9,693,554 3,077,721
Light extraction 3 23,554,246 5,183,788 2,929,447 12,575,038 3,217,660
Dark extraction 1 23,885,794 5,004,782 3,054,332 12,080,884 3,359,437
Dark extraction 2 22,157,136 4,929,488 2,929,710 11,349,636 3,084,920
Dark extraction 3 21,643,358 4,981,140 2,933,669 11,307,910 3,060,296
Total 139,756,952 30,357,300 18,007,251 71,758,166 19,538,439

Collected number of sequences from the 6 different sequence libraries. The number of reads used for assembly and mapping divided as pair-end (PE) and single-end (SE) reads retained after cleaning and filtering as described in Material and methods.

Chen et al.

Chen et al. BMC Genomics 2012 13:589   doi:10.1186/1471-2164-13-589

Open Data