Table 2

Validation of the unplaced scaffolds positioning
Category Number Proportion (%) Sequence length Number of uSNPs
Megabases Proportion (%)
Discordant 100 7.0 6.9 8.7 149
Tentatives 1328 93.0 72.3 91.3 1798
noinfo 197 13.8 1.2 1.5 213
nosynt 187 13.1 5.0 6.3 249
sscvalid 166 11.6 12.4 15.6 242
valid 778 54.5 53.7 67.8 1094

Categorization of unplaced scaffolds positioned on the pig genome. The table presents the number of scaffolds in the different validation categories (based on comparative genomics with the human genome): discordant , not mapped on the human genome (noinfo), mapped on the human genome but in a region not found on the pig genome (nosynt), on the same chromosome but at a substantially different ( 1Mb) location (sscvalid), and concordant chromosome and position (valid). The Tentatives category correspond to the sum of noinfo , nosynt , sscvalid and valid.

Servin et al.

Servin et al. BMC Genomics 2012 13:585   doi:10.1186/1471-2164-13-585

Open Data