Table 3

Mapping of pig EST assemblies on pig chromosomes
Chromosome Forward Reverse Total
Contigs Singlets Loci Contigs Singlets Loci Contigs Singlets Loci
1 580 3343 1799 594 3346 1798 1174 6689 3597
2 639 2983 1452 646 2855 1365 1285 5838 2817
3 415 2248 1132 472 2574 1299 887 4822 2431
4 435 2049 1013 398 2112 1025 833 4161 2038
5 373 1774 870 375 2007 846 748 3781 1716
6 667 3188 1503 567 2826 1415 1234 6014 2918
7 526 2590 1211 631 3007 1039 1157 5597 2250
8 301 1637 851 215 1434 754 516 3071 1605
9 357 1966 1011 371 2082 1007 728 4048 2018
10 207 1118 555 200 1182 598 407 2300 1153
11 128 762 449 121 855 496 249 1617 945
12 388 2133 869 361 1759 896 749 3892 1765
13 489 2425 1293 515 2467 1321 1004 4892 2614
14 508 2693 1226 523 2716 1175 1031 5409 2401
15 284 1852 893 288 1828 797 572 3680 1690
16 147 817 498 139 894 509 286 1711 1007
17 348 1630 585 215 905 474 563 2535 1059
18 192 964 479 176 1127 479 368 2091 958
X 220 1018 591 216 1165 618 436 2183 1209
Y 4 14 6 1 6 6 5 20 12
Unplaced scaffolds 1077 7726 2251 812 4387 2212 1889 12,113 4463
Total 8285 44,930 20,537 7836 41,534 20,129 16,121 86,464 40,666

Numbers of EST (expressed sequence tag) assemblies and the corresponding independent loci mapped on the pig genome are shown for each chromosome. “Forward” and “Reverse” indicate that the assemblies were aligned on the chromosomes in the orientation from pter to qter or from qter to pter, respectively.

Uenishi et al.

Uenishi et al. BMC Genomics 2012 13:581   doi:10.1186/1471-2164-13-581

Open Data