De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
1 Seed Biotechnology Center, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA
2 Genome Center, University of California, Davis, 1 Shields Ave, Davis, CA, 95616, USA
3 Present address: Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32610, USA
BMC Genomics 2012, 13:571 doi:10.1186/1471-2164-13-571Published: 30 October 2012
Additional file 1:
Ashrafi et al. 2012 Pepper Annotation Supp 05072012. A Microsoft-Word 2007 file with 16 figures comparing the results of Blast2GO for GeneChip (Sanger-EST) and transcriptome assemblies of pepper as well as the IGA transcriptome assembly procedure flow chart.
Format: DOCX Size: 2.8MB Download file
Additional file 2:
Ashrafi et al. Pepper Assembly Supp 05072012. A Microsoft-Excel 2007 file with 2 tables (worksheet) corresponding to Annotation results of the Sanger-EST and IGA transcriptome assemblies of pepper.
Format: XLSX Size: 13.1MB Download file
Additional file 3:
Ashrafi et al. Pepper Assembly Supp 05072012. A Microsoft-Excel 2007 file with 13 tables corresponding to SSR and SNP lists identified in both the Sanger-EST and IGA transcriptome assemblies of pepper. It also includes identified SSR motifs and list of diversity panel (adapted from Hill et al. ).
Format: XLSX Size: 8.3MB Download file