Additional file 18.
Table S13. Analysis of the COG classes enriched in differentially expressed gene performed using hypergeometric distribution. In the upper part of the table (rows 1–22) analyses was performed considering only the more significant differentially expressed genes (p-value <= 0.0001; log2 ratio >= 1 or log2 ratio <= −1), in the lower part of the figure (rows 24–45) analysis was performed considering all genes differentially expressed (p-value <= 0.001; log2 ratio >= 0.7 or log2 ratio <= −0.7). column (A): COG class; column (B): total number of genes belonging to each COG class in chrs 1–2 and in plasmid; columns (C, F, H, J): number of differentially expressed genes identified in each comparison; columns (D, G, I, K): p-values calculated for each comparison; column (E): total number of genes belonging to each COG class in chr. 1 and in chr. 2; column (L): COG description.
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Campanaro et al. BMC Genomics 2012 13:567 doi:10.1186/1471-2164-13-567