Table 3

Percentage of EIs overlap with DMRs
Cell line Overlaps with DMRs (%)
T-DMR R-DMR C-DMR Whole genome C-DMR
Hyper Hypo Hyper Hypo Hyper Hypo
% En. p % En. p % En. p % En. p % En. p % En. p % En. p
H1 53.4 2.8 <10-3 19.4 3.1 <10-3 5.8 3.1 0.02 11.7 3.8 <10-3 4.9 1.4 0.24 5.6 5.2 <10-3 0.9 1 0.31
ADA-38 39.1 2.1 <10-3 17.4 3.2 <10-3 2.2 1.2 0.33 6.5 2.2 0.05 6.5 2 0.08 4.1 4.1 <10-3 0.4 0.5 0.84
HA 60.4 2.9 <10-3 19.3 3.1 <10-3 11 5.5 <10-3 16.7 5.4 <10-3 4.5 1.3 0.25 8.6 7.3 <10-3 1 1.1 0.34
HPF 59.5 2.8 <10-3 17.5 2.8 <10-3 12.8 6.1 <10-3 17.5 5.1 <10-3 5.7 1.5 0.09 9.4 7.6 <10-3 1.3 1.4 0.04
HAEC 62.3 2.9 <10-3 14.3 2.2 <10-3 11.7 5.6 <10-3 15.7 4.5 <10-3 4.6 1.2 0.29 7 5.3 <10-3 1.1 1.1 0.27

Notes: En. = Enrichment. Statistical significances were tested by 1000 permutations.

Wen et al.

Wen et al. BMC Genomics 2012 13:566   doi:10.1186/1471-2164-13-566

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