Table 4

Comparison of metabolic key enzymes: Glycolysis and Calvin Benson cycle.

Glycolysis

Calvin Benson Cycle

GPI

FBP

SBP

FBA

TPI

PFK

GAPDH

PGM

ENO

PYK

PGK

RPI

TKT

TALDO

PRK

RPE

RBCO


Aca11017

••

••

••

••

••

• • •

• • •

• • •

••

Cyn51142

••

••

••

• • • • ••

• • •

• • •

••

Cyn8801

••

••

• • ••

••

••

••

Glo7421

••

-

••

• • • • •

• • •

••

••

• • •

••

Mic843

••

••

• • ••

• • •

• • •

••

Nos7120

••

• • •

• • ••

••

••

••

••

••

ProMed4

-

-

••

••

• • •

••

Pro9211

-

-

••

••

••

Pro9215

-

-

••

••

SycJA23

• • •

• • •

••

••

••

Syc7002

••

••

••

••

••

••

Syc7803

-

••

-

• • •

••

••

Syc7942

• • •

• • ••

••

Syn6803

••

••

••

• • ••

••

••

••

ThermoBP1

••

• • ••

••

••

Trich101

••

-

• • •

••

• • •

••

••


A summary of the genes involved in central carbon metabolism: Glycolysis and the Calvin Benson cycle. Black dots represent the number of genes assiated with CLOGs assigned to the respective enzymatic function. The table does not distinguigh between individual CLOGs assigned to the same enzymatic function. Abbreviations are: GPI Glucose-6-phosphate isomerase (5.3.1.9), FBP Fructose-1,6-bisphosphatase (3.1.3.11), SBP Fructose-1,6-/Sedoheptulose-1,7-bisphosphatase (3.1.3.37), FBA Fructose-bisphosphate aldolase (4.1.213), TPI Triosephosphate isomerase (5.1.3.1), PFK Phosphofructokinase (2.7.1.11), GAPDH Glyceraldehyde 3-phosphate dehydrogenase (1.2.1.12/59), PGM Phosphoglycerate mutase (5.4.2.1), ENO Enolase (4.2.1.11), PYK Pyruvate kinase (2.7.1.40), PGK Phosphoglycerate kinase (2.7.2.3), RPI Ribose-5-P isomerase (5.3.1.6), TKT Transketolase (2.2.1.1), TALDO Transaldolase (2.2.1.2), PRK Phosphoribulokinase (2.7.1.19), RPE Ribulose-5-P 3-epimerase (5.1.3.1), RBCO Ribulose 1,5-bisphosphate carboxylase/oxygenase (4.1.1.39).

Beck et al. BMC Genomics 2012 13:56   doi:10.1186/1471-2164-13-56

Open Data