Table 1

Chief features of inversion breakpoint regions in D. mojavensis

Inv

Breakpoints and adjacent protein-coding genes in D. mojavensis

TE copies at co-occurrent breakpoints

Inversion-associated inverted duplications

Preexisting duplications in parental genome

Transposition-associated genes and D. virilis lineage specific genes (underlined)

Gene gains (bold) and putative position effects


2c

AC

Ligatin-GstD1a


BuT5

GstD1a-GstD1b

GstD1aGstD1b

BD

Slbp-GstD1b


2f

AC

αTub84B-Pli


Lsp1β

BD

CG1091-Lsp1β


2g

AC

Dmoj\GI22722-CG4511


Dmoj\GI22722 CG32344

    CG2846 Dvir\GJ23779

BD

CG32344-spas


2h

AC

pasha-ppk20


7.1 kb from AB

ppk20-ppk21

Dmoj\GI24456

Dmoj\GI23123

BD


2q

AC

Spargel-CG1213


1 kb from AB

4.3 kb from CD

CG1213-CG1208

Dmoj\GI22075

BD

CG31528-CG1208


2r

AC

Hsp68a-Hel89B


Galileo

Hsp68a-Hsp68b

Histone clusters

Hsp68a

Hsp68b

BD

Hsp68b-Cad99C


2s

AC

CG9801-CG10214


BuT5

CG10375

BD

CG34135-CG10375


Guillén and Ruiz BMC Genomics 2012 13:53   doi:10.1186/1471-2164-13-53

Open Data