Table 1

Arrays analysed
No Technique Platform Used strains Growth conditions Study References Accession Technology
1 Microarray TIGR (30 k v1) Af293 5 × 106 conidia per ml, inoculated in complete media, for 17 hours, at 30–37°C, 160 rpm Temperature shifts (30 to 37°C and 30 to 48°C) [4] ArrayExpress: E-MEXP-332 DNA amplicon microarray
2 Microarray Custom (Roche) Af293 108 conidia per ml, inoculated in potato dextrose media, for 24 hours, at 28°C, 160 rpm Effects on growth in the presence of TSA [18] GEO: GSE19682 60mer oligonucleotide
3 Microarray Febit CEA17 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm Comparison among wild type, ΔgprC, and ΔgprD mutant [25] Omnifung in situ oligonucleotide
4 Microarray TIGR (22 K v3) ATTC 46645 107 conidia per ml, inoculated in Brian’s media, for 14 hours, at 37°C, 150 rpm Comparison between planktonic and biofilm growth [17] GEO: GSE19430 in situ oligonucleotide
5 Microarray Febit CEA17 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm Comparison between wild type and ΔmpkA mutant [8] Omnifung in situ oligonucleotide
6 mRNA-Seq Illumina ATTC 46645 Af293 CEA10* 107 conidia per ml, inoculated in Brian’s media, for 14 hours, at 37°C, 150 rpm Comparison between planktonic and biofilm growth [12] On enquiry GAIIx
7 mRNA-Seq Illumina CEA17 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm Comparison between wild type and ΔmpkA mutant This study ArrayExpress: E-MTAB-1236 GAIIx
8 Proteomic 2D-DIGE ATTC 46645 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm Design the A. fumigatus mycelial and mitochondrial proteome map [21] Omnifung MALDI-TOF/TOF
9 Proteomic 2D-DIGE CEA17 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm Comparison between wild type and ΔmpkA mutant This study On enquiry MALDI-TOF/TOF

GEO: gene expression omnibus (http://www.ncbi.nlm.nih.gov/geo webcite); Omnifung (http://www.omnifung.hki-jena.de webcite); ArrayExpress (http://www.ebi.ac.uk/arrayexpress/ webcite). *CEA17 strain is the uracile auxotroph derived from the CEA10 strain.

Müller et al.

Müller et al. BMC Genomics 2012 13:519   doi:10.1186/1471-2164-13-519

Open Data