Additional File 4.

Table S2. The 41 disrupted scaffolds which could be aligned on two different chicken chromosomes. Break1: the right-most coordinate of the alignment of the left part of the scaffold to one chicken chromosome. Break 2: the left-most coordinate of the alignment of the left right part of the scaffold to another chicken chromosome. Chicken 1 and Chicken 2: chicken chromosomes to which the left and right parts of the duck scaffold align to respectively. Pair-end support: refers to the reliability of paired-end sequence data.

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Rao et al. BMC Genomics 2012 13:513   doi:10.1186/1471-2164-13-513