Table 1

Sequencing Summary
All variants Large events (>100 bp)
Deletions Insertions
Sequenced Nonubiquotus Sequence Mapped Additional Sequence
Bases (Mb) Coverage SNV SNV Deletions Insertions Total Events Size Events Contigs Size
FPR3757 r1 155.74 56 19 - 4 1 24 0 - 0 0 -
FPR3757 r2 148.06 53 19 - 4 1 24 0 - 0 0 -
RCH_I15 164.67 59 59 35 5 2 66 0 - 0 0 -
RCH_I18 199.24 71 64 40 5 4 73 2 35.6 kb 0 0 -
RCH_I19 190.7 68 66 42 5 1 72 0 - 1 2 43.9 kb
RCH_I21 188.24 67 61 39 6 4 71 1 14 kb 0 0 -
RCH_I29 203.32 73 60 36 6 3 69 1 101 bp 1 3 41.1 kb
RCH_I33 122.77 44 59 35 6 3 68 0 - 0 1 1.8 kb
RCH_I34 168.63 60 69 45 6 3 78 0 - 0 0 -
RCH_I35 222.67 80 55 31 4 2 61 0 - 0 0 -
RCH_I36 155.12 55 79 55 11 5 95 0 - 0 0 -
RCH_I38 217.8 78 65 41 7 4 76 0 - 0 0 -
RCH_I42 125.61 45 70 46 6 7 83 0 - 0 0 -
RCH_I44 176.91 63 102 78 6 4 112 1 15.1 kb 0 0 -
RCH_I48 245.34 88 77 53 6 5 88 0 - 0 0 -
RCH_I49 191.01 68 71 47 9 3 83 0 - 0 0 -
RCH_I56 109.38 39 173A 149 9 4 186 0 - 1 7 43 kb
RCH_I57 126.2 45 72 48 7 3 82 0 - 2 18 73.6 kb
RCH_I58 189.15 68 71 47 6 2 79 0 - 1 1 44.2 kb
RCH_I59 180.82 65 82 58 6 6 94 1 144 bp 0 0 -
RCH_S15 181.39 65 52 28 5 1 58 1 457 bp 0 0 -
RCH_S18 121.72 43 66 42 5 2 73 0 - 0 0 -
RCH_S20 129.55 46 64 40 7 4 75 0 - 0 3 21.1 kb
RCH_S21 215.48 77 64 40 10 2 76 0 - 1 5 43.4 kb
RCH_S29 169.87 61 76 52 8 2 86 0 - 1 1 42.4 kb
RCH_S33 159.97 57 112 88 11 5 128 0 - 0 0 -
RCH_S34 207.21 74 76 52 7 3 86 1 4.2 kb 0 0 -
RCH_S35 195.87 70 61 37 4 2 67 1 - 0 0 -
RCH_S36 205.53 73 75 51 5 1 81 0 3.8 kb 1 0 44.3 kb
RCH_S38 179.7 64 89 65 7 3 99 1 766 bp 1 0 4.6 kb
RCH_S43 147.2 53 88 64 11 3 102 1 14 kb 0 0 -
RCH_S44 233.41 83 90 66 11 3 104 0 - 1 0 42.1 kb
RCH_S47 211.06 75 89 65 11 2 102 0 - 0 0 -
RCH_S49 197.15 70 68 44 4 2 74 0 - 0 0 -
RCH_S56 170.35 61 96 72 8 5 109 0 - 0 0 -
RCH_S57 185.6 66 76 52 7 3 86 0 - 1 0 42.9 kb
RCH_S59 229.36 82 86 62 9 6 101 0 - 2 2 81.9 kb
RCH_S60 202.12 72 117 93 11 2 130 1 14 kb 0 1 35.5 kb

A - 84 SNV & 1 insertion confined to a single 10 kb stretch were removed from all subsequent analysis.

Tewhey et al.

Tewhey et al. BMC Genomics 2012 13:508   doi:10.1186/1471-2164-13-508

Open Data