Table 6

Functional Annotation Clustering of statistically-significant under-expressed genes in European eel silver males from the river Tiber site (Nā€‰=ā€‰8) in comparison with silver males from the lake Bolsena site (Nā€‰=ā€‰7)
Annotation Cluster Gene
Annotation Cluster 1 Actin alpha 1, skeletal muscle
(Enrichment Score: 6.78) Actin-related protein 2/3 complex, subunit 3
Chromodomain helicase DNA binding protein 2
Collagen, type I, alpha 1
Collagen, type I, alpha 2
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Dynein light chain 2
Eukaryotic translation initiation factor 2 subunit 1 alpha
Eukaryotic translation initiation factor 3 subunit 2 beta
Eukaryotic translation initiation factor 3 subunit J
Heterogeneous nuclear ribonucleoprotein D-like
Isoleucyl-tRNA synthetase
Keratin 8
Mitochondrial ribosomal protein 63
Mitochondrial ribosomal protein L13
Mitochondrial ribosomal protein L15
Mitochondrial ribosomal protein L17
Mitochondrial ribosomal protein L23
Mitochondrial ribosomal protein L38
Mitochondrial ribosomal protein L45
Mitochondrial ribosomal protein S18B
Mitochondrial ribosomal protein S18C
Mitochondrial ribosomal protein S23
Mki67 (FHA domain) interacting nuclear phosphoprotein
Profilin 2
Ribosomal protein S8
Ribosomal protein S29
SDA1 domain containing 1
Seryl-tRNA synthethase
Slow myosin heavy chain 2
Small nuclear ribonucleoprotein D1 polypeptide
Small nuclear ribonucleoprotein D3 polypeptide
Small nuclear ribonucleoprotein polypeptide E
Small nuclear ribonucleoprotein polypeptide F-like
Thrombospondin 1
Thrombospondin 4b
Titin a
Tubulin, alpha 8 like 2
Tubulin, alpha 8 like 4
Tubulin, beta 5
Vessicle-associated membrane protein, associated protein B and C
Annotation Cluster 2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b
(Enrichment Score: 4.69) ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e
ATP synthase, H+ transporting, mitochondrial F0 complex, alpha subunit 1
ATPase, H+ transporting, lysosomal, V1 subunit H
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
NADH dehydrogenase (ubiquinone) Fe-S protein 4
Chromatin modifying protein 5
COX17 cytochrome c oxidase assembly homolog
Cytochrome c oxidase subunit VIIa 2
Frataxin
Heat shock protein 9
Mitochondrial ribosomal protein 63
Mitochondrial ribosomal protein L15
Mitochondrial ribosomal protein L23
Mitochondrial ribosomal protein L45
Nuclear cap binding protein subunit 2
SDA1 domain containing 1
Solute carrier family 25, member 16
Succinate dehydrogenase complex, subunit A, flavoprotein
Succinate dehydrogenase complex, subunit B, iron sulfur
Succinate dehydrogenase complex, subunit D, integral membrane protein A
Succinate dehydrogenase complex, subunit D, integral membrane protein B
Succinate dehydrogenase complex, subunit A, flavoprotein
Transcription factor B2
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1

Pujolar et al.

Pujolar et al. BMC Genomics 2012 13:507   doi:10.1186/1471-2164-13-507

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