Additional file 2.

Table S2. Differential expression analysis. baseMean (mean expression level, at the base scale, as a joint estimate from both conditions); baseMeanA (mean expression level, at the base scale, as an estimate for condition A); baseMeanB (mean expression level, at the base scale, as an estimate for condition B); foldChange (fold change from the first to the second condition); log2FoldChange (logarithm to basis 2 of the fold change); pvalue (significance of the fold change); padjusted (p values adjusted for multiple testing with the Benjamini-Hochberg procedure, which controls false discovery rate); resVarA (ratio of the single gene estimates for the base variance to the fitted value in condition A); resVarB (ratio of the single gene estimates for the base variance to the fitted value in condition B).

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Ferreiro et al. BMC Genomics 2012 13:483   doi:10.1186/1471-2164-13-483