Table 3

Comparison of physical map assemblies obtained with the SNaPshot and WGP technologies at their optimum final cut-offs (1e-25 for SNaPshot; 1e-11 for WGP).

SNaPshot

WGP


Total number of contigs

631

434

Average contigs size (Kb)

374a

469b

Median contigs size (Kb)

295a

374b

Number of singletons

2112 (18.8%)

4145 (36.9%)

Coverage in length

236 Mb ± 65a

199 Mb ± 42b


    Comparison with 12 reference sequenced contigs


Number of chimerical contigs for 10 Mb

0.6

0.6

Percentage of mis-assembled BACs

9.5%

2.7%


b Based on an average bands size of 6.1 kb ± 1.3.

a Based on an average bands size of 1,1 kb ± 0.3.

Philippe et al. BMC Genomics 2012 13:47   doi:10.1186/1471-2164-13-47

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