Molecular phylogeny of A. indica with plants of other family (a) and within the Meliaceae family (b). Individual rbcL and rbcS alignments (*.phy) were concatenated and bootstrapped using 100 replicates (a) through 'seqboot' in PHYLIP version 3.69 . For intra-family phylogeny, rbcL sequences were bootstrapped (b). Phylogenies for each replicate was reconstructed using the 'dnaml' option in Phylip, after choosing either Chlamydomonas reinhardtii (a) or Citrus sinensis (b) as outgroups. The consensus phylogeny with bootstrap values highlighting the branch support was plotted using 'consense' and 'drawgram' options in Phylip.
Krishnan et al. BMC Genomics 2012 13:464 doi:10.1186/1471-2164-13-464