Table 4

The top 20 miRNAs in either sample, ordered by number of necrotic reads
Annotation Annotation coordinates Normalized read counts log2(FC) p-value
Necrotic Unaffected
mir-143 chr2:136030751–136030831:+ 697353.81 461481.09 −0.60 3.64E-001
mir-21 chr12:34201564–34201656:+ 57776.26 122252.79 1.08 1.02E-001
mir-451 chr12:42820765–42820830:- 49029.44 3944.06 −3.64 5.16E-007
mir-30a chr1:53848997–53849104:- 46416.19 109713.26 1.24 6.12E-002
mir-148a chr18:45214547–45214615:- 25801.77 26340.33 0.03 9.64E-001
let-7 g chr13:28999418–28999498:+ 23644.76 10926.89 −1.11 9.22E-002
mir-126 chr1:294113068–294113141:+ 15131.46 54694.16 1.85 5.98E-003
mir-30e chr6:121824300–121824380:- 12711.24 15622.78 0.30 6.49E-001
mir-142 chr12:32630402–32630482:- 11700.22 2961.25 −1.98 3.43E-03
miR-d5 chr5:4391269–4391380:- 10960.52 3887.77 −1.50 2.51E-02
miR-223 chrX:51247504–51247526:- 10712.16 367.80 −4.86 2.38E-10
mir-144 chr12:42820909–42820993:- 8968.19 1426.54 −2.65 1.34E-04
mir-10a chr12:22389423–22389503:- 8433.66 26108.75 1.63 1.50E-02
mir-30d chr4:5729458–5729537:+ 8170.45 10106.35 0.31 6.39E-01
mir-23a chr2:56861158–56861228:- 5968.90 3586.67 −0.73 2.64E-01
mir-27b chr10:26148775–26148855:- 5775.87 10319.10 0.84 2.03E-01
mir-191 chr13:26605640–26605720:- 4910.64 3262.54 −0.59 3.69E-01
mir-146b chr14:118471587–118471686:+ 3848.33 4350.12 0.18 7.87E-01
let-7c chr13:130665020–130665114:+ 3605.36 5812.52 0.69 2.94E-01
mir-146a chr16:60604389–60604467:+ 3486.58 635.24 −2.46 3.68E-04
mir-23b chr10:26149009–26149089:- 2741.48 3640.56 0.41 5.33E-01
mir-1 chr17:64096221–64096329:+ 1986.93 3300.20 0.73 2.66E-01
mir-152 chr12:21743214–21743294:+ 1764.21 3394.96 0.94 1.53E-01
mir-99b chr6:39533215–39533285:+ 1434.86 3234.90 1.17 7.72E-02

The reads shown in the table are normalized to counts per million calculated by the TMM normalized sample size, the log2 of the fold change (positive for down regulation in the necrotic tissue) and the p-values are determined by the exact-test.

Podolska et al.

Podolska et al. BMC Genomics 2012 13:459   doi:10.1186/1471-2164-13-459

Open Data