Additional file 3.
The known miRNAs of the miRDeep2 pipeline missed by the unique mappings from Novoalign. 24 of these miRNAs are found twice in the genome, indicating assembly errors. Raw reads are un-normalized and according to the Bowtie alignment produced by miRDeep.
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Podolska et al. BMC Genomics 2012 13:459 doi:10.1186/1471-2164-13-459