Table 2

Candidate genes for immune function, sex differentiation and temperature-response found in our dataset
Gene Transcript ID Transcript length Match length Match identity Match accession
Immune genes
 MHC class I 29_Locus_17662 136 136 96% DQ145788
29_Locus_8295 526 444 91% ABA42599
21_Locus_8663 1455 717 90% ABA42599
25_Locus_8701 642 567 88% ABA42600
33_Locus_20320 141 138 86% ABA42600
25_Locus_21578 159 105 62% ABA42599
21_Locus_10540 222 216 50% ABB92561
 MHC class II β chain 21_Locus_1538 921 420 99% DQ124231
29_Locus_1474 231 231 94% DQ124232
 MHC class II α chain 21_Locus_7902 232 222 74% AF256650
29_Locus_2120 133 111 92% AF256650
 MHC class II DM α chain 21_Locus_1203 963 648 43% AEC52935
21_Locus_6166 155 144 60% ACY01474
 Toll-like receptor 2 21_Locus_29589 125 123 98% ABU95017
Putative sex-differentiation genes
 Sox8 25_Locus_11477 766 222 97% AAO39011
25_Locus_1895 162 162 93% ABB02374
21_Locus_14808 309 252 79% AAO49746
 Sox 9 21_Locus_21814 173 173 100% AY168558
21_Locus_18139 167 165 98% ACU12331
21_Locus_24105 142 67 100% AY168558
 Dax1 21_Locus_20366 134 117 92% ABQ88373
Temperature-responsive genes
 CIRBP 37_Locus_775 500 252 82% XP_003224509
 HSP27 21_Locus_6322 1028 543 82% XP_002190077
33_Locus_379 827 606 75% XP_002194703
 HSP40 (DnaJ) 21_Locus_336 1887 1233 97% NP_001005841
21_Locus_2214 2001 1014 83% XP_003217107
 HSP47 25_Locus_2437 1689 1212 90% BAF94140
 HSP70 21_Locus_6649 1124 1113 96.5% AEO13403
25_Locus_13016 548 429 92% EAY98319
21_Locus_13133 369 369 90% ADD69959
21_Locus_4641 3563 2406 90% XP_003210546
25_Locus_21367 271 270 89% XP_002193237
 HSP70BP 25_Locus_4659 1484 693 81% NP_001025928
25_Locus_5331 1431 696 84% XP_003226240
 HSP75 21_Locus_7217 2174 1566 90% BAF94145
 HSP90 33_Locus_89 2694 1230 + 372 98% AF275719
21_Locus_16233 979 975 90% BAD95027
21_Locus_31051 139 138 96% AAD11550

The accession number for the top BLAST hit is given. Not all matches for heat-shock proteins are shown. CIRBP = Cold-inducible RNA binding protein.

Miller et al.

Miller et al. BMC Genomics 2012 13:439   doi:10.1186/1471-2164-13-439

Open Data