Table 4

Binding site predictions for module 1 and module 2
Module Consensus sequence Motif logo P-value TF motif TF family
1 AAAAAGAAA 1.68e-05 AZF1 BetaBetaAlpha – Zinc Finger
2 ACCCCACT 3.74e-04 YGR067C BetaBetaAlpha – Zinc Finger

Column 1 lists the putative consensus DNA binding motifs. Column 2 is the motif logo visualizing the information content of nucleotides (i.e. information content) at each position of the DNA motifs. Column 3 shows the p-value of the motifs. Column 4 is the predicted TF motifs that may bind to the DNA motifs. Column 5 is the family name of the TFs that may bind to the DNA motifs. The TF motifs were predicted by TomTom from the DNA binding motifs.

Zhu et al.

Zhu et al. BMC Genomics 2012 13:437   doi:10.1186/1471-2164-13-437

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