Table 3

Frequency of repeat motifs (group) in all analyzed virus genomes
Repeat motif (group) Frequency Percentage (%)
Mono- 19534 37.36
A 8564 16.38
C 1434 2.74
G 1408 2.69
T 8128 15.54
Di- 25452 48.68
AC/CA 3358 6.42
AG/GA 3124 5.97
AT/TA 9029 17.27
CG/GC 4094 7.83
CT/TC 2664 5.09
GT/GT 3183 6.09
Tri- 6855 13.11
AAT/ATA/ATT/TAA/TAT/TTA 1447 2.77
AAC/ACA/CAA/GTT/TGT/TTG 666 1.27
AAG/AGA/CTT/GAA/TCT/TTC 910 1.74
ACC/CAC/CCA/GGT/GTG/TGG 613 1.17
ACG/CGA/CGT/GAC/GTC/TCG 479 0.92
AGT/ACT/CTA/GTA/TAC/TAG 228 0.44
AGC/CAG/CTG/GCA/GCT/TGC 540 1.03
AGG/CCT/CTC/GAG/GGA/TCC 538 1.03
ATG/ATC/CAT/GAT/TCA/TGA 736 1.41
GGC/CCG/CGC/CGG/GCC/GCG 698 1.33
Tetra- 274 0.52
Penta- 48 0.09
Hexa- 125 0.24
Total 52288 100.00

Zhao et al.

Zhao et al. BMC Genomics 2012 13:435   doi:10.1186/1471-2164-13-435

Open Data