Additional file 2.
Results from BLASTp search and DiGReF analysis. Part A of the table lists the gi-numbers of all RTs from the psi-blast search that were positive in a DiGReF analysis with default settings (cut off seven or more adenine exchanges in a 50 bp window. Part B shows the additional 47 hits obtained when lowering this cut off to five or more A substitutions. Only six of these are most likely DGRs (i.e. they feature a (L/I/V)GxxxSQ or (L/I/V)GxxxNQ sequence, and their VR is part of an ORF and not a low complexity repeat). Part C lists the remaining gi-numbers of RTs from the psi-blast search that yielded no hit in the DiGReF analysis.
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Schillinger et al. BMC Genomics 2012 13:430 doi:10.1186/1471-2164-13-430