Figure 2.

Synteny plot of the chromosomes of strains TX07-7308 and ATCC 25017 generated by NUCmer. This plot shows regions of identity between the two chromosomes based on pair-wise alignments. Strain TX07-7308 sequence is represented on the X-axis. Strain ATCC 25017 sequence is represented on the Y-axis. Plus strand matches are slanted from the bottom left to the upper right corner and are shown in red. Minus strand matches are slanted from the upper left to the lower right and are shown in blue. The number of dots/lines shown in the plot is the same as the number of exact matches found by NUCmer. Numbers indicate nucleotide positions within the respective chromosomes.

Siddaramappa et al. BMC Genomics 2012 13:422   doi:10.1186/1471-2164-13-422
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