Table 4

Genomic positions of salinity tolerance candidate genes in stickleback (Gasterosteus aculeatus)
Species Locus GenBank Accession Source GA Chr. Mbp start EV %ID ENSEMBL Annotation ENSEMBL Gene No.
D. rerio ATP1α1b AY008375 Rajarao et al. 2001 i 21.699 0 78 atp1α1 ENSGACG00000014324
S. salar CaSR-1 AY245445 unpublished vii 22.314 0 81 CaSR ENSGACG00000020687
CaSR-2 AY245443 unpublished vii 22.314 0 81 CaSR ENSGACG00000020687
CaSR-3 AY245444 unpublished vii 22.314 0 81 CaSR ENSGACG00000020687
S. salar CFTRI AF155237 Chen et al. 2001 xix 10.185 0 83 CFTR ENSGACG00000009039
CFTRII AF161070 Chen et al. 2001 xix 10.185 0 83 CFTR ENSGACG00000009039
S. salar cldn10e BK006391 Tipsmark et al. 2008 i 20.691 -87 78 novel ENSGACG00000013985
S. salar COL1A1 CK873772 Seear et al. 2010 v 3.438 -95 86 COL1A1 ENSGACG00000003361
xi 0.910 -78 87 COL1A1 ENSGACG00000005143
S. salar COL1A2 EG649361 Seear et al. 2010 x 9.261 -59 88 COL1A2 ENSGACG00000006511
S. salar GH1 EU621898 Von Shalburg et al. 2008 xi 16.069 -21 66 novel ENSGACG00000014829
GH2 EU621899 Von Shalburg et al. 2008 xi 16.069 -19 66 novel ENSGACG00000014829
O. mykiss GHR1 AY861675 Very et al. 2005 xiv 10.388 -161 69 GHR ENSGACG00000017924
GHR2 AY751531 Very et al. 2005 xiv 10.388 -163 72 GHR ENSGACG00000017924
S. salar IGF2 EF432854 unpublished xix 13.287 -121 83 IGF2 ENSGACG00000011125
S. salar NKCC1a DQ864492 Mackie et al. 2007 xiv 13.969 0 82 NKCC1 ENSGACG00000018343
xiii 19.857 0 76 NKCC1 ENSGACG00000014721
S. salar SPARC BT045906 Leong et al. 2010 iv 4.486 -171 83 SPARC ENSGACG00000016847

Sequences from zebrafish (Danio rerio), Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) were aligned in ENSEMBL (v59 - v61) [60] (BLASTN algorithm; CDNA_ALL database; Distant homologies search sensitivity), against the genome of three-spined stickleback (GA) (BROADS1). Mbp (= bp x 10-6); EV = E-value exponent; %ID = percent similarity.

Norman et al.

Norman et al. BMC Genomics 2012 13:420   doi:10.1186/1471-2164-13-420

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